升级了R4.2的好处

生信技能树

发布于 2022-07-26 02:44:58

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代码可运行

运行总次数：0

代码可运行

之前的R版本是4.1，而且很多R包版本也不够新，有一些小瑕疵一直懒得解决，比如seurat的热图一直有莫名其妙的乱码，最近又遇到了两个高频包它们共用的一个依赖包出现了版本冲突，忍无可忍了，就卸载了4.1版本的R，并且删除了一千多个R包，节省了10G的硬盘空间。

然后重新安装了最新版R，并且重新一次性安装了一千多个包，这次居然有意外收获，莫名其妙的我可以在线直接安装GitHub包啦：

> remotes::install_github(repo = 'genecell/COSGR')
Downloading GitHub repo genecell/COSGR@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

1: All                              
2: CRAN packages only               
3: None                             
4: rlang     (1.0.3 -> 1.0.4) [CRAN]
5: pillar    (1.7.0 -> 1.8.0) [CRAN]
6: sass      (0.4.1 -> 0.4.2) [CRAN]
7: htmltools (0.5.2 -> 0.5.3) [CRAN]
8: igraph    (1.3.2 -> 1.3.3) [CRAN]

Enter one or more numbers, or an empty line to skip updates: 3


Installing 2 packages: RcppParallel, proxyC
将程序包安装入‘C:/Users/win10/AppData/Local/R/win-library/4.2’
(因为‘lib’没有被指定)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/RcppParallel_5.1.5.zip'
Content type 'application/zip' length 1284458 bytes (1.2 MB)
downloaded 1.2 MB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/proxyC_0.2.4.zip'
Content type 'application/zip' length 478351 bytes (467 KB)
downloaded 467 KB

程序包‘RcppParallel’打开成功，MD5和检查也通过
程序包‘proxyC’打开成功，MD5和检查也通过

下载的二进制程序包在
 C:\Users\win10\AppData\Local\Temp\RtmpILwdej\downloaded_packages里
✔  checking for file 'C:\Users\win10\AppData\Local\Temp\RtmpILwdej\remotes1e9f89a48e8\genecell-COSGR-5511add/DESCRIPTION'
─  preparing 'COSG':
✔  checking DESCRIPTION meta-information ... 
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building 'COSG_0.9.0.tar.gz'
   
将程序包安装入‘C:/Users/win10/AppData/Local/R/win-library/4.2’
(因为‘lib’没有被指定)
* installing *source* package 'COSG' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (COSG)
>